Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
CESC rs34127780 chr1:217482798 C/CAGT 4.55E-5 295 21.4 24 11.83 KM Plot
CESC rs34173700 chr17:35787814 C/CA 5.59E-5 292 21.3 23.78 8.45 KM Plot
CESC rs34308799 chr2:3492232 C/G 3.82E-8 289 20.92 27.2 1.43 KM Plot
CESC rs34418989 chr7:123177129 A/T 6.23E-6 291 22.83 18.07 3.72 KM Plot
CESC rs34588176 chr10:81728993 A/G 4.15E-9 298 25.17 16.47 2.62 KM Plot
CESC rs34771618 chr3:161059795 A/C 2.49E-5 298 25.27 20.63 19.1 KM Plot
CESC rs34784192 chr3:49274823 G/T 6.99E-7 291 21.2 26.27 1.9 KM Plot
CESC rs34896809 chr3:161059804 C/T 2.49E-5 298 25.27 20.63 19.1 KM Plot
CESC rs34986055 chr7:123135765 A/T 5.01E-6 295 23.42 18.27 3.72 KM Plot
CESC rs35028742 chr17:72895476 T/TG 1.25E-5 295 16.87 27.77 21.2 KM Plot
CESC rs35044461 chr7:65536601 G/GT 6.12E-6 293 21.23 21.97 4.62 KM Plot
CESC rs35085713 chr4:57932798 C/T 2.81E-8 297 21.2 27.5 11.6 KM Plot
CESC rs35100811 chr3:161084046 A/C 9.78E-7 288 22.4 21.07 19.4 KM Plot
CESC rs35144289 chr19:11391528 CT/C 1.13E-5 287 19.83 21.15 25.77 KM Plot
CESC rs35161927 chr2:3486174 CT/C 2.35E-8 293 20.7 30.63 1.43 KM Plot